AGEseq - installation and set up of blat for mac

Deep coil usage

1deepcoil -i /path/to/pep.fa -outpath ./deepcoil --plot --dpi 300

resources requirement

CPU 64 core

mem 120Gb

memory not enough lead to failed job directly with nothing left

34699 protein without GPU

ID:1107111
Job Name:deepcoil_NisV4
Partition:batch
Nodes:1
Run Time:13:00:09
RunTime / TimeLimit:7.74%
SEFF:Cores per node: 64 CPU Utilized: 14-18:07:00 CPU Efficiency: 42.55% of 34-16:09:36 core-walltime Memory Utilized: 60.58 GB Memory Efficiency: 50.49% of 120.00 GB

citation:

https://pubmed.ncbi.nlm.nih.gov/30601942/

web application:

https://toolkit.tuebingen.mpg.de/#/tools/deepcoil

GitHub:

https://github.com/labstructbioinf/DeepCoil

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