Bash snippets
Bash snippets that are useful when doing bioinformatic jobs.
Bash snippets that are useful when doing bioinformatic jobs.
installation pip install bio_embeddings[all] usage bio_embeddings …
installation dependency Required Tools Bowtie2 TopHat HISAT2 Samtools SRAtools HTSeq + all …
Biopython stuff
Python snippets that are too long for me to remember.
Java
how the internet works#bioinformatics #meme #fun #geek #coding #datascience #IT #software …
👁️ Python library to plot DNA sequence features (e.g. from Genbank files) …
NUPACK - analysis and design of nucleic acid structures, devices, and systems. http://nupack.org/ …
https://github.com/rderelle/Broccoli dependency DIAMOND Fasttree manual …
download ftp: http://bioinfadmin.cs.ucl.ac.uk/downloads/DISOPRED/ althought the archive marked as …
https://github.com/steuernb/NLR-Annotator Requirements MEME suite and JRE are already on GACRC …
using HMMER with Pfam